Similar regions between promoters of opuE

sub CCCTATATATTTTATACTAAAATGAGGAGAAGGAGAAACGAAATATTTTTCTGAATATTT hal ..............TACGAAAAGGAGGGGA..........AAATGATTGTTTGAATGTTC -300 -290 -280 -270 -260 -250 sub TTACTTTAATTATTTTTTGAAAGCGTTTTATTCTTTATTCCCTTCTAGGTTTGCAACGGT hal TGATTT---TTATATTATGTTATAGTTTTCTTTGTGATTCC-TTCGGTTTTTCCTAATGT -240 -230 -220 -210 -200 -190 sub ATTTCCAGCTTATGATCAATGTTTCATCGCTTGAATGGCCGGGAATACTTTGTTAGGTTA hal -TCTTTAGTTGATGA........TGATTGTTTGAATGTTCTG-ATTTTTATATTATGTTA -180 -170 -160 -150 -140 -130 sub AGTTACCAAGTGCACCCGCAAAAGAATTTCTTTTGTTTTGCACTTACGCCAGGCTGCTTA hal ............................................................ -120 -110 -100 -90 -80 -70 sub ACTGGCACCATCAATTTGAGAGGTGATGCAACATTATTAGAAATGAAGAGAGGGTAAAAC hal ......................................AGAAAAGAGGAGTGAGTGAA.. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...