Similar regions between promoters of proH
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AATTAAAGTAAAAAAAGAAGGGGCTAAGCTCCAGGAAGTCGTCCTCTATCAATTTAAAG- hal ...........AAAAAGTAGGTG.............................TTCAAAGC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTACGAAGCTGCCAAGCTATATAAAAAACAGCTGAAGGTAGAGCTGGATCGCTGTAAAA hal ATTCGGAAGC.............AAAAAGTAGGTGAATGAA................... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AACTGATTGAAAAAGCTCTCTCAGATAATTTTTAATAGAAACAAACACCCGGCGCCAAGT hal ............................................................ -180 -170 -160 -150 -140 -130 sub GTGAACCGGGTGTTTTCTGCTTTTCATTATACATATTTGTCGAAAA-GAAACAATACAAA hal .......GGGTTTACGCGCCCTGACATCAAGCAAATATGTGGTGCATGGTACAGGACAAA -120 -110 -100 -90 -80 -70 sub TCAATAATGGCCTTCAAACTTGACATCATTTCCTCACGTGGTAACATTTTAAACGTGTGA hal TCAAAAA...........CCTGACATCA............GTAAGTTTTTAACC...... -60 -50 -40 -30 -20 -10 sub AA hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...