Similar regions between promoters of serA

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCACCGAATCCTGCTGTAAAGACAGCTCGCGGGCTTAGAGCCATTGGCTCATCACCGCCG hal ....................................................CACCGC-G -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<< sub GTAGGGAATTTCACCCTGCCCCGAAGATTGATCATATGAA-ATTTAATTACATTATAAAC hal GTATGAACCTTCCGCCCCTCACGA...TTGACGCTCTGAACATTTAAGTA.......... -240 -230 -220 -210 -200 -190 sub GATAACTGGTTGGCTGTATAGAGAATTGCTTCAAATTAAATATATTACCTGCAAGCTGTC hal ..........................TGCTTCAAAATCATTCCATTGCTTGC......TC -180 -170 -160 -150 -140 -130 sub AGATCATTGATTTATTAGGCTTTACTTTTATCCTTTACTGCGTCAATACACGTTGACACT hal TGAACATTTAAGTAGGAGCGCTCCGGTTAATCCGTTAC...................... -120 -110 -100 -90 -80 -70 sub CTTTTGAGAATATGTTAAATTATCAGATATTTAGTTTGTCAATTTAGGAGGAAATCTAAC hal CCTTGGAGACGTAGTTAAAT........................................ -60 -50 -40 -30 -20 -10 sub G hal . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...