Similar regions between promoters of serC

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACAATCTGTGTTCCACTACCATATGCATATTATCCCTCGCTACGGAAAAGGAGATGGATT hal ACAAACGGTTTTTCATTATCATCTTCATCTTCTTCCACGATATGGTGAAGGAGACGGATA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGGAGCGGTTTGGAAAACGCATGCTGATGATTATAAACCGGAGGATCTGCAGAACATCTC hal TGGGGCTGTTTGGAAAGATCATAGTAGTCAATATTCGGGAGATGATCTACAAGTATTATC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTCCTCTATCGCAAAACGCCTGGCCTCATCATAAGATGAGGTTATTTTATTTTGTGAACA hal CTCATCCATACGTGAACATCTG...................TTATTTCATTT........ -180 -170 -160 -150 -140 -130 sub TTTCGCAAACATCCGTCAATTTCTTTTGATAATTCTAATTTTTTATCAAAAAACTGAATT hal ............................................ATCATAGTAGTCAATA -120 -110 -100 -90 -80 -70 sub TTTGTGATAGGAT--AATTGTATTATTTT-ATACATTAACGTGGAAAACAGGGAGAGATC hal TTCGGGAGATGATCTACAAGTATTATCCTCATCCAT--ACGTGAACATCTGGGAAAGATC -60 -50 -40 -30 -20 -10 sub ATA hal ATA -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...