Similar regions between promoters of sigH
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TAATATTGCGACTCAAATTCACGTTGCGACCTCTGACTATACTGAGCAGTGGGCGATTTT hal ..........ACCCAAATCTATGTAGCCACTTCTGACCTCGCAGAACAATCCCATATTTT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGGACAGGGGGCATTGCGGAAATCGGCCCGGGAGCTTCTGAGAGAGGTAGAAACGATTGA hal TGGGAGTGGAGCCCTGCGAAAGTCAGCAAGAGAGCTTTATAATGAAATGGAAGTAACAGG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAGGCGAATAGAGAGACGGGTAAGAAAAATCACTTCCGAAAAGCCGGCGGGTAAAATTGC hal AAAGGGGATTGAGAAAACTGTCGAAAAAAGCAATAAAGAACATAATTCGACAAAAATTGC -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTATCGGAAGAGGTTTTGAAAACGTTTGAAAAGTGGAGGCGGGGAGACTTAGATTAAGT hal CCTTACCGAAGAATTGGCCGAAATTTTTGAAAAATGGCGTCGAGGCGACAGATGAGCGGT -120 -110 -100 -90 -80 -70 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ sub TGACGCTTTTTTGCCCAATACTGTATAATATTTCTATCTACGTGCGCCGGGGGGATCGGA hal TGACGGACTGGAAAATCGTGCTATATAATGTTCGTAT....................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...