Similar regions between promoters of treP

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TAATAAGGTCAGATTTTCGAGGTTTTCCTTCAAATTGGGAGAGATCGGTCTGTCCTGATT hal ............................................................ -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTCTTCAAGCTCTTTGATGAGCTGAAGCGCTTTGTCGCGTTTATTCATAGAGGCTCACCC hal .......................GTAGCGGTTGGACTTGTATATACAAA........... -240 -230 -220 -210 -200 -190 sub TGCTTTTTAATGTCATATTCAATAAGTGCTTGTGACTTTTAGGGTAACCTTGTCTGTTTC hal .....................................TTTCGGTAAAGCTTTATCGTTAA -180 -170 -160 -150 -140 -130 @@@ @@@@@@@@@@ sub ATATATTCCAGACTAGGATGAAAGCGCTATAAAAAAGTGTTGACTACCT-GTATATACAG hal AAATCTTCC...................ACATAAAAGGATTGACTAACTTGTATATACAA -120 -110 -100 -90 -80 -70 @ @@@@@@@@@@@@ sub GA----ATACAA-TATGATTATAAGTTGTATATACAAGTTATAAAAACGGATACGGAGGG hal GATAAAATACAAGTAGCGGTTGGACTTGTATATACAAATTCTAATAA............. -60 -50 -40 -30 -20 -10 sub GTTGGC hal ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...