Similar regions between promoters of tuaB

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCTGAAAGGCGATATGAGTATGATTGGCCCTCGTCCGGAACGGCCCGTATTTACGGAAAA hal ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTCCAGAATGAGATTCCAGGCTTTACACAGCGTCTGGGCTCAGGTGAACGGCGGTTACG hal ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATATGACGCCGAAGGAAAAGCTGATATTTGATTTATATTACATTCG---CAATCTGACTT hal ..............................ACTTATGTTCCATTTGTTGCATTATG-CTT -180 -170 -160 -150 -140 -130 sub TCACTTTAGAATTAAAAATTATGTTAAAAACTTGTAA-AGTAGTTTGGACGGGTGATGGT hal TGCTGTTTCAACTATTAAT-AAGTTAGACTTTGATAATAGAAGTGTAGCCAGTTTA--GT -120 -110 -100 -90 -80 -70 sub GCAAGATAAAACGGGATTCCATTATTCACCATCAATCTGAGCTTAAAAAGAAGTAGGGAA hal TTAA-ATCAAAAGGATTACTATTACT.................................. -60 -50 -40 -30 -20 -10 sub TATG hal .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...