Similar regions between promoters of tyrZ


                                                                      
          >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>        
sub       AATATTGACAGGGCTGCTTAGAAAGGTAGCTGACAATCTTCATACAACATAAGCTTTGAC
hal       ..................TAAAAAGAGAGCTG.................TGAGCGTTGAA
       -300      -290      -280      -270      -260      -250         


                                                                      
                                                                      
sub       GGGAATCCAGTAGCGGTTTGTCTCCCTGTTTCA-GAGAGCCGGCGGTAGGTGCGAGCCGG
hal       GAGTGAC-AGTAGCGAAC-GTCTCCCTGTAAAAAGAGAGCTGGTGGTTGGTGCAAATCAG
       -240      -230      -220      -210       -200      -190        


                                                                      
                                                                      
sub       CGCACAGGCAAA-CGTGAATTACCTCCCCAAGCTTTCTTTGTGAACCTTAGTAGCAAAGA
hal       TACAAAGGCGACTCGTGAAGTACAGCTTGGAGCTTTTTCTTTGCTATTTTGGTGAAGAAA
        -180      -170       -160      -150      -140      -130       


                                                                      
                                                                      
sub       ACGGGAAA-CCGTTAT-----TCGAATGAGCGGAAG----ACAATGTCTTCAACCAGGGT
hal       CGGGGCATGCCGTTATCATGTTGGAGTTGGGAGAAATGCTACTATTTCTCCAAAAAGGGT
         -120       -110           -100           -90       -80       


                                                                      
                         ]]]]]]]]]]]]]]]] ]]]]]]]]]]]]]               
sub       GGTACCGCGTGCATTGAGCCACGTCCCTTAT-TGGGATGGGCTCTTTTTTGTGTTTGTAA
hal       GGTACCGCGAG---TAAGCT-CGTCCCTTATGTGGGAGGGGCTTTTTTATTTTTTTATAA
          -70       -60       -50        -40       -30       -20      


                       
                       
sub       AAAAGGAGGAAAA
hal       A............
           -10       -1


   >     : other CDS		-     : gaps within a similar region
   ]     : terminator		.     : gaps between similar regions
   }     : RNAs			@     : known binding sites
   <,[,{ : opposite direction

About alignment...