Similar regions between promoters of wprA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CCTGATGGAAATGCTCCTCATCCGCAAGAAAAAAGAAAAATCAACAGGAGGCCTGTGGGT hal ............................AATAATGAAAAAACA................. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTT hal ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]] ]] sub TCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCT----GGTTTTT hal .....TGATTAAATGGAAAA...........CGGTTTTTTCATACAGATTATAGATATTT -180 -170 -160 -150 -140 -130 sub TTTATATTTATCCCCTCA------TATTCCAAATCATTTAAAATAACCTTAAAATTCCCT hal TTTATAAATTTACACGAAAGTAATTCTTTCCAATAATGAAAAAACATGATTAAATGGAAA -120 -110 -100 -90 -80 sub GTAAGCGGTATCT-CGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCA hal AGAAG-GCCATCAACCTTCTAAAAAAATTTGATCGAGTGATGGAGGTACTT......... -70 -60 -50 -40 -30 -20 sub GGAGGGATAAC hal ........... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...