Similar regions between promoters of xsa
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCGGATTACGGCATCGTCGGTGATTTATTTGAAGTTGTCCCGTTATTAACTGAGGAATTC hal ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]] sub AAACAGCTGAATATACACTCATAAAGGAAATCCCGGACTTTAAAAGTCCGGGTTTTTTCA hal ......................................................TTTTCA -240 -230 -220 -210 -200 -190 sub TATTTATAAATACATACGTACAAATATAAAAACAATAGAAAATGTCGTTGACATGTACGA hal TTAATGACAAAACAGACGTACTGCAATTCCAGCAACAG..........TGACGCCTGAGC -180 -170 -160 -150 -140 -130 sub ACATATATAATATGGTTACTTTAAAAGCGCTTACATTCATGCTGACTCCTCAGGCAAACG hal AGCTCTATGATTGGGCAACTTTA.....GCTTGGATCCATGCAG................ -120 -110 -100 -90 -80 -70 sub ACAGATCACATATTTGACTGTGGTGCTTTTCAT--ATCCGTATGAAAG--GAATGATCAG hal ........................GCTTTTTATGAATCAGTATTAAAGTTGAATAAAGTG -60 -50 -40 -30 -20 -10 sub AGGC hal AGG. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...