Similar regions between promoters of ybbI
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGCGAAAAAAGCCATGCTTTTGCTTCCCGCTTTTGAGCGGATATTTTCCATGGTGCGACG hal ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAATCATCTTGGCCGTCAATCATCTGAACATACGCGCAAAACACCTTTATATGAAAAGCG hal ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>> sub GGTTCCTTGATAAAGGACGGCGAAGAATCGGGCCGCTTGGAGAACAGTTGATCCTTCATC hal ....CGTCGATAAAGGATGG--AAGAAT................................ -180 -170 -160 -150 -140 -130 sub ATTTCTTATAGTCTTAAG-TGAAATAAAATTTCAAAAATTTAAAAACATAG-TTGAAATA hal ..TTCTTATTGACATAAAATGAAACTAAATTTCATATAAAACTATCAATAGGTTGATTTT -120 -110 -100 -90 -80 -70 sub TCATAACAGAAATGAATATACTGAATATTGAGATATATCATTTTAAAACAGGGGGCATCC hal TAATTTTATAATCTAGTATAATGAA................................... -60 -50 -40 -30 -20 -10 sub TC hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...