Similar regions between promoters of yciA

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCCGGAGGAATCGGAGGGTTTTTCTTGCCGAACATCTTAGGATCTCTCAAACAGATGACA hal ...................TTTTTTTCACCATCATCT....................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GGCACATATGCTATCGGTTTATCACGTTTCCTGTATCGCGCTGCTGGCGTTTGCACTTGT hal ...ACATCTGCTA............................................... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCTTGCCGCAGGCTATTACTGGCGGAAAAGCTGGAGCGCGGAAAGCAGCCCGGCGGATGT hal .................................................CCAGCGAATGT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> sub TTAGGATTTTGACGGACACGCGTTTGTGCGTGTCTTTTTTA---TTTTCTCTTGATTTTC hal T.......................TTTTCCTTTCTCTTTAAGCTTTTTCATTTACTTCTC -120 -110 -100 -90 -80 -70 >>>>>>>> sub AACAGTGAACCG-ATCAAA-ATAAATAGTAATTATTACGATTTGTTAGTGAGAGGAGTTT hal AAGACTTTATAGGATAAGATATAAATCGTAATTATTCTTATTTAAGAGGTGGAGGAGGT. -60 -50 -40 -30 -20 -10 sub TCTGA hal ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...