Similar regions between promoters of ydeE
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TAAATAGGCTTTTCAGCTTTATCAATCGATGGCTTCCAGCTCATCGGATAATTTTCAAAA hal ............................................................ -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<< sub GAATTGATAGGCATGATACGCATCCTTTTTCACTCAATTATATGAATG--TGCCGTTTA- hal ..AATAATGGGCATGATAA-CAACCAATCGTAGTCAATCGCGTCAACCCTTTCCTTTTAC -240 -230 -220 -210 -200 -190 sub -TAAGACAATTATAACTTTCTTTTATTGATGCCTTTTTATGAACAGCATGCTTCAATAAA hal GTAGTATGATTATACAATGATTTTCTGGTCTCGTAGCAATGAA................. -180 -170 -160 -150 -140 -130 sub ACCTGTACAAATACAAGTGAATCACTTACTTTATTTCATATAAGTCATCCTGCAAAACTG hal ......ACCAATCGTAGTCAATCGCGT...................ATCCGATGAAACGG -120 -110 -100 -90 -80 -70 sub TGCACAGAATGTCGGATAAATACATTTCACTCCTGTTATTCTTTGGTTAAAGGAGGCCAA hal TGCATGGAAAGTCGGATGGAGAGCGGATTCCCTTGATATTCT.................. -60 -50 -40 -30 -20 -10 sub ATAA hal .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...