Similar regions between promoters of ydhU
sub CGGAGAAATGCGTACAATGATGCAGTTTTT-TTCCAAAGCTCTAATTTCAGAGGAAAGCA ste CGGAGAAATGTCGACGTTAAACAATTATTTGTTTCAGTCATTCAATTTTCGGCAAAAAAA -300 -290 -280 -270 -260 -250 sub GAAACAGTACCG------CGATCTGCTTCGCGGCATTTTTTTAGAGGAGACTGCCCACGT ste GAAGCTGCGCCCGTTTTACGAGTTGGTGGCGAGCATCACCGCCGAAGAGTTTGGCCATGT -240 -230 -220 -210 -200 -190 sub TGAACTGGTTCAAAACACAATCAATGCTTTATTAGATGAATCAGGCGGTGAAGGTGTCGG ste GGAGCTCGTGTCCAATGCGATCAACCTTTGCTTGACCGGCTCCACCCATCCAGGTGA--- -180 -170 -160 -150 -140 -130 sub CAGTCAAGGTACAGATCAAGCGCCACTTGATGAAGCGGTTAAACATGCT-AATCCTCATC ste ---------TCCGGATACAGCGCCGATGAAGGATGCGAA-AGACAAGCGCAATACGTATC -120 -110 -100 -90 -80 -70 sub ATTATATTATTGGAGCGCAAAGTTCCCTTCCTGTTGATGCAGGGGGCAATCCGTGGAACG ste ATTTTATCGCGACGGCGCAGACGGCGTTTCCCGGCGATTCGATGGGGAAGGCGTGGACGG -60 -50 -40 -30 -20 -10 sub GGTCGTGG ste GGGAGT.. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...