Similar regions between promoters of yeeI
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGTTACTCTAGTTTTCGGAAGCATGTCGTTTCCAACCCTGACAAACTCCGGTGGATTTA hal .....ACTCGATTTTCGCTAAGCA.................................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGGAATCGACAGATCGAAATACGACGTATATCGATCATTCCCCTTACAAACTTAGTGATC hal .......................................................TGCTC -240 -230 -220 -210 -200 -190 >>>>>>>>]]]]]]]]]]]]] ]] sub AGAAGAAAGCCCTTAGCTAGG--GCTTTTTCTTGCTTTACGGAAGACGGTTCCATTTTCC hal ATCAGAACGTTCTTTGGGTGCTCGCTTATGATGACTATCCGATGGAC---TCGATTTTC. -180 -170 -160 -150 -140 -130 sub ACATCGCGGCATTCCTTCTATTTCTAACGCAAGACACTCGAAACAACCAAACCATTTGAG hal ....CGTGGTATTTGTTCTAT...............CTCGAAACA........ATTTGTT -120 -110 -100 -90 -80 -70 sub GTATAATGGATAAAGTGAATAACAGTATTTAGATTGATATATATGAAAGAGAGTGGAACA hal CTATCATGACTACA....ATAATAAAATACATCATGAGAACATTGAAAGCGAGTGGAACG -60 -50 -40 -30 -20 -10 sub TC hal T. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...