Similar regions between promoters of yfiA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTACCGTTGGCACCATTCCGCAATTCCAGAAAGGGCTCATGGAGCAGCAGGTATCCGTTG ste .................CGGCAATTCATGATAACGCT....................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGAAGCTGACTGTTGAAGCGTGGGCAGAGAAATCGTTCCAAAAGCTGTGGCAGGCGCTGA ste ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCCTGTCAAAAACAGTGCCGAACGCGCGTGTGGCAAGACTCATTCTTGAGGATTTAGTGG ste .........................GCGTGTAGCTCGACCC................... -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGGCCAACAAAGACTTCTGGCCTGAGCTTGATCAAAGCCCAACCCGCATATCATAAATGA ste .........................GCTTGATCAA..CCCGACCGGCAATTCATGA.... -120 -110 -100 -90 -80 -70 sub AATTCCCCCATTTTCG-AATCTGTAATTGTATATAATAGAAAGAAAATGGGGGGATCTGA ste ....CGCCAATCGTCGCAATTTTCAATCGTTTAT.......................... -60 -50 -40 -30 -20 -10 sub T ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...