Similar regions between promoters of yfkD
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TAGGCTCTACGCTGCAGATCGCTATGTTTGTCGCACCGGTTCTCGTCATCTGTTCTATCT hal .........................GTTTTTCTAACCGGGCCACGTCCT........... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTTTCCGACAAGCATGCCGCTTGTATTTACATTGCCTGAGCTCGTCGCGATGGTATCAG hal ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGGTTCTCTTGATGATCGCGATTTCGAATGACGGGGATTCCAACTGGTTTGAAGGGGCGA hal ........TTACTCACCGTGATTTGAAAAG----GGTTTTCCTCTCGTTTTAAG...... -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CACTGCTTGCTGCATATGTCATTATGGCGATCGGCTTTTTCCTTCTTTAACCTGAAAAAA hal ...................................TTGTTTCATCTTGAAC......AAA -120 -110 -100 -90 -80 -70 sub TGATGGATAACAACAAAGCGGGATGAAAAGACTAAGGGAAAATGCCATAGAAAGAGTGAT hal GGATGGATAA..............GAAACAACGAAAACAATATGAAATA........... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...