Similar regions between promoters of yfkO
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGGACGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAA hal ...................GCTCTATTTA............................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACTACGTCTTTTTGGAGGATACCAGTTTGTTTCAATATACGGAAAGCAGACACCGTCTCG hal .........................................................TGG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]] sub ACAAATTCCGATTTGT---TGATTTTGCGCGGCGGGGGAAATGAGAGAGGCGCCTGCCTG hal ACAAATAAAGTTTTATCATTAATTTTGTGC......................CTTACCGG -180 -170 -160 -150 -140 -130 ]]]]]]]]]] sub CGGCAGCGCGCTTTTTTGTTTGGTATCAAAATTGATACTATCCAACAAAAATGTGCGTAC hal AGCCAGAACGCTTT.....................................TGTGGTACC -120 -110 -100 -90 -80 -70 sub TTTTACTTTTTATCATAATGGCTACAATAGAGATGAGAGTAATCTAAAGGAGAGGTGTTT hal TTTTACTT...............AAAATAGGGATGATGGACAAATAAAG........... -60 -50 -40 -30 -20 -10 sub TAC hal ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...