Similar regions between promoters of yflD

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AATTTTTTCTTGAACAAGAGTCCAAAGCCAAGAAAGAACAAGCTTGAGCTAAGAGGATTC ste ............................................................ -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ACAAAAAGCAATATTTTTTGTATCGTGTTGTCTATTCCTAAGTTGAAATTCAGGACATAA ste ................TTTGCAGGCGGCTGTTGACACCGGCGTGGACCGCGACGCCATCA -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCGACATACGTTTTGATCCATAACAGGACGACCGCAATTAAGAAGAAGGCCAGTCCTCTT ste TCGGCAAACATATT................................ACGCCGTTGCTCGA -180 -170 -160 -150 -140 -130 <<<<<<<<<<<<<<<<<<<< sub TCTTTTATAAATGTTTTCATTGTTACACTCCTTTTTTCCGATCCAGTTCGAGCGAAACGA ste TCTTGT.............TTGTTCCACACCATAT......................CGT -120 -110 -100 -90 -80 -70 sub TAGAAAAAACGAACGTATCCAATATAACACGAATCAGCAGATTAGAAAAGTGAAAATCGT ste TCGAAAAA..............TATGTCACGA-TGTGCCGTTCGAAAAAGTGGAA..... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...