Similar regions between promoters of yhjA
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CAGGCCTGGCGGTTCTTGATATTGTTCGGGAAATTCATCATGAAAAAATGCTTTTATAGG hal ...........GTAGTTGATATT......................AGATGCTTTTTTAAT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<< sub ATTCGTAAGATTTGAATCAGACATCAGCAACGCTCCTTTTCTGTTTGGTGTACATTCGTA hal GCTGTTTAGTTTT............................................... -240 -230 -220 -210 -200 -190 sub TGTGTACCCCTGAGCATAAGCAGAAAAACATGTTTTGGCAGTTTGAATAGTGAAGGAAAA hal ............AGCATATGCAAAGGAA................................ -180 -170 -160 -150 -140 -130 sub AGAAAACAAGAAAAAACAAAGCCTTCTTCCATATTTATCTTGTCAAATAAGACTATATGA hal ............AAAATAACGACTTGATCCAACATTTTTTT.....ATATGCCGATCTGA -120 -110 -100 -90 -80 -70 sub ATTATGATAAATTCGAGCTATAAATCAACTAAATATTGGGTGTTGGGAGAGTGAATCGTC hal AT........................ATCCATATATTGGG.................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...