Similar regions between promoters of yhjG
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CAAGGTGCCGAAAGGAAAATATTTTGTCGTTGGAGATAATCGCATATACAGCTTCGACAG hal ........................TCTCGTTGAAATTAAT...................G -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] sub CCGGCATTTTGGTCCGATAAGAGAAAAAAATATTGTCGGTGTGATTTCTGATGCCGAATA hal CTGCCATTTGGGAGCGATTACATTAATA.....TCTCGTTGAAATTAATGAAGCC..... -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub AAAAGACGCTAATTGAAGAGGCGTCTTTTTGTATGCCGTTTGGAAAAATGTGTTGAAGAA hal ...................................CCTTTAGGAGCAAGTGGTGCAAGAA -180 -170 -160 -150 -140 -130 sub AAATTTGTAAGGAGCTATAATCAAAATTGTTACCTGTGTAACAAATTTATATATTTTTTT hal .........................................................TGT -120 -110 -100 -90 -80 -70 sub GACTGGAGGGCCGTTTTTATTGGTTTTTGTTCGTTTTTCATGAAACAAAAGGAGTGGTGA hal CAATGGAGGGGCGATT............................................ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...