Similar regions between promoters of yhxA

sub TCGCCATTTCCTATATCATACAGAAAACGGCTAGGCTTCACATTGCTATTGCAATGGCTG ste ......................................................TGGCTG -300 -290 -280 -270 -260 -250 sub TCCAAGTTGTTTCGAGTGCGACCTTTATCAGTACGATGCTGAGCATTGTCACTTTGCCTG ste GAAAGATTCGTTTTACGGCGATCTTCAT......GATGTTGGGCATT.......TTCCCG -240 -230 -220 -210 -200 -190 sub TTTTGCTTTGGAAGCTGCATCCTCTTTCTTCTTGAGAAAGGGGATGTT----TTATTATT ste GTTTGATTTTTAACCTG.........TCTTCATGTGAATGGAAAAGATGGCGTGAATTTT -180 -170 -160 -150 -140 -130 sub TACGCGGTTTATTGACTCTGACCCGGTCTGGCTTTATATTGAAGGCAGGGAAATCATCAC ste TACACG...............CCCGGTTTGATTTT......................... -120 -110 -100 -90 -80 -70 sub CAAGACATCACATAAAGAGAAGGTCTGTTTCAATTGAATTGGCATTATAGGGAACGCTAA ste ............................................................ -60 -50 -40 -30 -20 -10 sub TGAA ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...