Similar regions between promoters of yisH

sub TCCAAAAAGCATTCTACACGCAAAAACACCAAAGAAATAAACAAAAATCACCATAGGCGG ste .....................AATCACACCAAAGA....AATTAAAATCACC........ -300 -290 -280 -270 -260 -250 sub ATAGCGGCATCCTTCGCCGCATTTCCGCTCAATTTATACC--CAACATCCTCTTTTGCCA ste ......................TTCGACTCAAATAATGCCGCCAACA............. -240 -230 -220 -210 -200 -190 sub TGTTTAAACATAACGGCCCGAAAAAATAAAACGCTTTCACAAAGAGCCGATATGTCCCCT ste .......AAATAATGCCGCCAACAATTAAAGCG....................GTCCAAT -180 -170 -160 -150 -140 -130 sub TAAAATTTCTCTCACGCATATGTGCGTTTGTCATAAGCTATCGTGAATAGCCCAATTGAA ste TAAAAT...........................................GTCCAATTAAA -120 -110 -100 -90 -80 -70 sub ATCGGAATTGTCATTTCACTTTACCTGTCTTTTTTTAATTTTTCAACAAAGGATGTGCTC ste ATCACCCATGTCA.....................................GGATGTGTTC -60 -50 -40 -30 -20 -10 sub GT ste G. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...