Similar regions between promoters of yjbQ

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTTTTGGATTAATGCAGTCATTTCGTCATAGCAGCCATGAATATCGCTGATGATATCGTA hal .TTATCAATTAGCTCCATAAGCTCATCATAGCAACCGTGTACATCACCAATAATATCGAA -300 -290 -280 -270 -260 -250 <<<<<< sub AGCCATGCGGTCTCCTCCTTACCGATTGTTTTAT----TTATTATGAAGCAAAGTGTTGT hal TTGCATGTCTTTTCCTCCCGACA-ATGGTATGATGACATCAATAGTAAGTAAAG...... -240 -230 -220 -210 -200 -190 sub GAGTCATCACAAGCTTTTATGTGCAAATTATAGAAGAAGAATCATTTTCTAAACAGGATT hal .....................................ACATTCGTGTTCTACAAATGAGT -180 -170 -160 -150 -140 -130 sub AAGACCTTATCACTTTATTTTTCATCATCAC--CCTTGTTAAAATCGCGTTATGTTTTTT hal .....................TGATCATAACTGCCTCGTTTATAT........GTGTTCT -120 -110 -100 -90 -80 -70 sub AAAAATGAGGTTTTGTTCTCTGAGTGAGAACTAGCATAACCCTGACTTAAAAAGGAGGTT hal ACAAATGAGTT...........AGTGGAAAGGAGGATGAACCT................. -60 -50 -40 -30 -20 -10 sub CTGATT hal ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...