Similar regions between promoters of yjqC
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGGGTTTTAGCGCCGAGCTCACTAATGAGAAAGACCGCCTGGCAGGTGTACACCCAAACA hal ...........................ATAAAGACGGGCTGGGAAG...ACACCCGATCA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATATTGTCAATCGGACGAAAAGAGAAATGGGACTGCAATTGGAGGTAAGCACGGCACAGC hal A............GACGAAAATTGACAT................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GAAATGCGCTATTCCGCAATTTTGGGTGCCGTGATAAAAGCTACATACAAAACGATTTGT hal ...........................GCCGAGAGAAAA.............CGACTTGT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTGATCGATATGTGGAAGCCGTCAAGCTTGGCTTTTATACATAAAACTAGACGGGACCTG hal TTCA...............CTTCTAGCATGGGTTTTAAA..................... -120 -110 -100 -90 -80 -70 sub CACGGTTGGCCTATTCCTTCATACGCTGGGGTTGTGCGAAAGTGTGGGGAGGAATGATTC hal .............TTGTTTCAAAAGCTGGCG.............TGGGAAGGAAT..... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...