Similar regions between promoters of ykoY
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGCTTTATACATTCATTGCTATGCTTCCGATTACATTTGTATATGTTTATCTCGGTGTGA hal ...............TTCCTATGCTTTTTTAGACCTTTGCCTATG............... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGCTCGGTGAAAATTGGAAGGCAGTCGGCTCTATTCTTGATCAATATATGCTTCCGATCG hal .......TAAAAAATGGTTGACCG-CGGACCTGTTCTTGGATAAAATGTAGCTATCAACT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GGATAGCGATTTTGGCGCTGTTCCTGCTCTACTTACTGATGAAAAAGAGGAAGAAACGCA hal ACATAGCTTTTAAGGGG.......................GAAAAAGA............ -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGCACTCCGAACAATTATCTGTATTTTTGAAAAATAAACGTTGACAAATCACTGCGCTGC hal .......................TTTTTCATAAAAAATGGTTGAC............... -120 -110 -100 -90 -80 -70 sub GCATATTATTGACGTATAAAATCATATTTCTTGAAATCCCAAAGGGGAGTAGCGTCCGGA hal .........................................AAGGGGAGTAGC....... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...