Similar regions between promoters of ykrW


                                                                      
          >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
sub       TCAGAGTCGGACTTTTAACAAGTGAAGAAAGACTTAAGGAAGCCGCTTATCGAATTGGCA
ste       .............TTTGACAAGTGCATAAA..............................
       -300      -290      -280      -270      -260      -250         


                                                                      
          >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                
sub       AACTGAACCTGTTTACCCAAAAAAGCATTGACAAGACCTTATAACGATGGGATAATTCAA
ste       ...................AAAAATGATTGACAACGCCAATCGGTGATGTCATAATTCAA
       -240      -230      -220      -210      -200      -190         


                                                                      
                                                                      
sub       AATAA------------TTTATAAAATCTATAT----------TTTCTTATCAAGAGCAG
ste       AGTAAATTTGCCAATTGTTTGACAAGTGCATAAACGAGCAGGCTTTCTTATCAAGAGCAG
       -180                  -170      -160                -150       


                                                                      
                                                                      
sub       GCAGAGGGACGAGCCCGATGAAGCCCGGCAACCGACTTATA-------AAGCACGGTGCT
ste       GCGGAGGGACGAGCCCAATGAAGCCCGGCAACCGGCTTGGCGCGCGCCAAGCACGGTGCT
         -140      -130      -120      -110             -100       -90


                                                                      
                                                                      
sub       AATTCTTGCAGCT-AGCGGCTGAGAGATAAGATTCGGACGAGAAACGAAACCTCTTTAGA
ste       AATTCTTGCAGCGGAAACGCTGAGAGATAAGA............................
                 -80        -70       -60       -50       -40         


                                        
                                        
sub       CGCGATTGCAGTTTGAAGAGGTTTTTTGAT
ste       ...........TATGAAGAGGCGTTTTTAT
        -30       -20       -10       -1


   >     : other CDS		-     : gaps within a similar region
   ]     : terminator		.     : gaps between similar regions
   }     : RNAs			@     : known binding sites
   <,[,{ : opposite direction

About alignment...