Similar regions between promoters of ykuU
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TAATGAGCAGAACACCGGCATTTGTAATCAGTCCCGCCCAATCATATTGTTTAATAAAGT hal .....................................................ATTGACT -300 -290 -280 -270 -260 -250 <<<< sub CCATGTTGAGCTCCTTTTCTAATTGATTGCTGCACATTGAGACTAGTTACCCTGTACATG hal CCAAAATTTACTTCTCTTATAAT--ATGGCTGTA.......................... -240 -230 -220 -210 -200 -190 sub ACCATGTTAAACGTTTTATTCAAAAATGTCGAAGCCAAAGACATACATGATTTGTTAAAA hal .............TATTATCAACTAATATCAATTATAAAAAAACAT-TTACTTCAAAGAC -180 -170 -160 -150 -140 -130 sub ATTGACTCAGGAAAT--CTGCTTTTATATAATGGCATTGCAATATAACTAAAAATGGTTA hal ATTGACTCCAAAATTTACTTCTCTTATAATATGGC--TGTAAGACAAC....AATGGTCG -120 -110 -100 -90 -80 -70 sub ATCACCCTTTATTTTCATGCGATTTTGACCTTTAAGCCAAACAATAAATTGGAGGGATAC hal TAGACCCTTT.................................................. -60 -50 -40 -30 -20 -10 sub AT hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...