Similar regions between promoters of ylmB
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GATCAAATACTTTCCGCTTTTTTTGATACGCCAATCCATGTATTATGGAATCAGGATCGG hal ................CTTTTTTAGACA................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CCGTTTTTAACAAGAGCTGAGCCGATAACGAATGCCTGACAAATATATATAGATTCATCC hal ...........................................................C -240 -230 -220 -210 -200 -190 sub TAGGGGTGCTTTGCGAAGCTGAGAGAGACTTTGT-------CTCAACCCTT-TTGACCTG hal TAGGGGTGCAAACCG---CTGAGAGAGATGTTTTTTAGCATCTTAACCCTCATTCACCTG -180 -170 -160 -150 -140 -130 sub ATCTGGATCATGCCAGCGGAGGGAAGCGGTGAAAAGCGGAGTACATCGGACTCCGTTTGT hal ATCTAGGTAATACTAGCGAAGGGAAGTGG..............................T -120 -110 -100 -90 -80 -70 ]]]]]]]]]]]]]]]]]]]]]]]]] sub TTTTATTAAGCCGTTTCATCACATTTGAAACGGCTTTTTTGATTTTAAAGAAT--AGGAG hal TTTTATTTTGTCCGTTCA................TTTTGTCCGTTCAATGAATCTAGGAG -60 -50 -40 -30 -20 sub CGGATTTACA hal .......... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...