Similar regions between promoters of ymfD
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TATCACGATACCATTTCTCCAGTGCTTGAATGCGATCCGGAAACAGCTCTTTTGCTGTTA ste .....................................................GCTACTT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >> sub AAACAAACCCATTACGATCAGCACGATAAACCGGTGCTTTATTCTTTAAATTATTTT-AG ste TATCAAAGGAATTTCGTTCA......TCAACCGCTACTTTATCAAAGGAATTTCGTTCAC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]] sub AGCGGATAAATTCAGATTTCATGTTTTGCGTAAACGATTCTAAAAACGGACGCCTGTATG ste AGGCGGGAAAT----AATAGGTGTTTTGCACCAATGGTT..................... -180 -170 -160 -150 -140 -130 ]]]]]] sub TGTCTGTTTTTTTATTTGCACTGATTCATGTTTCTTTGTACATACTTTCATTCCGGTTAA ste ....................CTGATTAATG....................TCCTGATTAA -120 -110 -100 -90 -80 -70 sub CGCAATATATAAGGGATGACAAGAAAGTGAATGGGTGAAAATGTTGAGAGAGAAAAATGG ste TGCAAGAAGAATGGGCTG............ATAGGTGGAAATATCGA...AGAAGAATGG -60 -50 -40 -30 -20 -10 sub A ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...