Similar regions between promoters of yneJ
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GACCTTGTGACAATGGATATTACAATGCCGGTGAAAAACGGCATAAAAGCGCTTCGTGAT hal ..CTTTGGGAAAATGACAAATAGAGTAC................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATCTTAACCTTTGATCCTAAAGCGAAGGTCATCATGTGCACCGCCATGCGCCAGCAAAGA hal ........CGTTTTTCCTTATGCGA..............................AAAGA -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTGTAACGGAAGCAATTGAGCTGGGGGCAAAGGATTTTATTGTTAAGCCGTTTGAGGAA hal ATGGAAAGGATCATGAATATTCTTTGGGAAAATGA......................... -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACAAAAGTGCTGGAAGCTGTAAGCCGCGTTATGGGACATTAAAGTCATTTCTTTTCAAAA hal ..............................ATGTGACATT.................AAA -120 -110 -100 -90 -80 -70 sub TGGTTTTTTTTATTGTTTTGGAGTATAGTATATAGTATCAACACTCCGAGAAACAAAGGA hal GGATCATGAATATTCTTTGGGAAAATGACAAATAG......................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...