Similar regions between promoters of ynzG

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAATCGAAGGCATCTGGCATTCTATAGCAAATCAATTTTATTCACTCGCCCAAGGGTTTG hal .............................AAACAATTTTGTTC................. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGAATGAGGATATCAATAAGCTTTCTGCGGATCTTGATCATGCTGCCGCCACTTGGGAAG hal ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGTTGCTAATAAAGCAAAAGAGTTTGTAACAAATTCATACCAAGGGTAAAAGAAAAATA hal ....................GCGTTAACAATAAATTCAT...........AAGAAAAATG -180 -170 -160 -150 -140 -130 sub AGGGCCTGAAAGGGCTCTTTTGCTTATAGTCATATTTCC-CGTAAGTATTACTTTTTGGA hal A..............................ATCTTTCTTCGTTATTATTAAACGATGAA -120 -110 -100 -90 -80 -70 sub TTTAATAAATTTTAAAGCGTGTTTGTTTCACTGAATTCATAGTCAAAAGGGGAATGTTTT hal TAATACAAACTT.........TGTGTTTCACCCTGTTTACAATAGAAAATGTAAACTTTT -60 -50 -40 -30 -20 -10 sub T hal . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...