Similar regions between promoters of yobU
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AACTGAATTGGTTATTCTTGTTCAGCCGTCAGCACGTCAGCGTATAGGTGAATGGTTCGG hal ......ATGGTTTATTATGGCTTACCGATCA............................. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATATGATGTCCTTCACTGTTGTGAGGAAGATGAAATCTGCCAGGCGGTGATTTCACTTCC hal ..............................TTAAAGATGGCAG-CGTTTATTTTCGTGTT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGAAGATCAATGGCTGATCGGTTTTTTGCTCCAGTTCGGAAAGGATATTGAGGTTCTGCA hal AG--GATTAATGGCTG.........................................GCT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >> sub GCCTCTTCATATAAGGGATAAAGTAAAAGAAACCATTCATCACATGCAAAAAATAT--AT hal GCCATTTTAAATATGGTTTA..............ATTTATCGGATTCGAAAAAAATCGAA -120 -110 -100 -90 -80 -70 >>>>>>>>> sub GAAACCTGACACACTGCTGTCAG-GTTTCTTTGTCTATAATCTTAAAAAAAGGAGGAGAT hal GACACCGCTCTTAAAGATGGCAGCGTTTATTT......ATTCGAAAAAAATCGAAGACAC -60 -50 -40 -30 -20 -10 sub CGT hal CG. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...