Similar regions between promoters of yodC
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AAGCTCCTTCAAGCGCTCTGCCAACATTTTTTGGCTGATCATCGGTATTGTTTCCGTTAT hal .....................CAACGCTTTTTCGTTG...................TTTT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTCTTTAAACCGTTTCGGCCCATCCATTAGCACATGGATGATCAGACCGTTCCATCGTTT hal CTATTTATTTTGTTTTGAGCAACGCTTT.................ATCGTTCAATCACTT -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCCCAGCAATGAGAATGCGGATTCCATTTTAGGGCACATCGTATTTCCCATAAGTCTTCA hal TAC..GAAAAGAGAATGGTGA....................................... -180 -170 -160 -150 -140 -130 sub TCCCTTCATCTATTGATTGACATG-TATTCAAT-GATCCATTACAATAATCTTTCAAGTT hal ............TTTAGTGACCTAATATTCAATCGTTCAATCACTTTACTTTTGTAAGT. -120 -110 -100 -90 -80 -70 sub ACATTTAGTAAGCTTCTAACTTTTCTATTATCATACCACGTTTATCCGAAGGAGGAAACA hal ...TTTGGTAATTTTCTATTTATTTTGTTTTGAG-CAACGCTTTTTCG............ -60 -50 -40 -30 -20 -10 sub CT hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...