Similar regions between promoters of yosX
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTATATTTATTTGGCTTATGTCTTTGGGAACCTTATCTTTGCTTTGAGTATTATTTTTCA hal ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>> sub TATAATGTGAAATTGTGTTTAGCTGCACTCATTATACGGCTCAAGCCCTTTTAGCATTTG hal ................................TATACGGCT...........AGCGTTCG -240 -230 -220 -210 -200 -190 sub TCAGGGCTAAG--TAAATGGATTTAAGAATGAAAATAAAATAACTATAGACAAATACAAA hal TCACAGGTGGGGGTGTATCGGTCAAAGAAATTGAACCAAAGA-CGATGCACTCAAAGAAA -180 -170 -160 -150 -140 -130 sub TAATATGTATAATATAATAATAGAAGATGATGAAATGACAGTTTTTTTATCTAATATACA hal AAA....................AAGACGATGCACTCAAAG............ATGCACT -120 -110 -100 -90 -80 -70 sub AAAACAAAAAATATACATTTTTTAAAACTAATATTTTATTCAAACTTTAAGGAGGTGATT hal CAAAGAAAAAA.....................................ATGGAGGTGAT. -60 -50 -40 -30 -20 -10 sub CA hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...