Similar regions between promoters of yqgG
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGATACTCAATTACAAACGAAATCGGCAGGGAAGTAATGGATAAATATTTTGAGCTGAAA hal .......................................GATTAATATTTT......... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>> sub TCGAAGCAGGACAAAGAAGGTACTCAGCAAAAGAATAAAGACAAAATTGA-AGAAAATGC hal .....................................AGGACAAAATTTCTAGTAAATCT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]] sub AGAAAACACAACGTCTTCTGATAACTAAAAAAAACGCTCACATGATGTGGGCGTTTTTTT hal AGTAAAAACA...............................ATGAAAGAGGCGGTCTTTT -180 -170 -160 -150 -140 -130 sub TATACAAAAAAACGCACTGATTTACAAAACCTTAACATTCGGTTCAAACCCTTTTTACAT hal TA..................TTTACAAAACCTTTACGTTTAGT................. -120 -110 -100 -90 -80 -70 sub AGAACCTTTACTCTATACGTGTAGGACAAATTACACATTATACGCAGGGGGAATTCAGGA hal ............CTTTACGTTTAGTATATAT............................. -60 -50 -40 -30 -20 -10 sub A hal . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...