Similar regions between promoters of yraN

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GCCACCCAAACCATCTATTTGTCTTTTATCAGGACTTCCCATGACATCAAGCAAAAAGGG hal ............................................................ -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTCCCATTCGTTTTTATTGTTAGGCATGGCTGATTCGTGGAAAAAAACGCCTTTGCTTGT hal ............................................................ -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCCGCCTCTCATGATTGTTACATTCGTCTTGACCATCGTCATCATCCTCATC-TTAAAGG hal ...................................TCATGAACACCCTCCTTATTTCATC -180 -170 -160 -150 -140 -130 sub TAGTATTTTTTATGTTTTTTAGTGTAGAAGGTAAA--AAAATAAAAATAAAATATAAGTT hal CAATAATTTCTATATATCT-ATTATAAAATTGAAACCAAGATTGGAAAAATATATAATTT -120 -110 -100 -90 -80 -70 sub TTCTTAATATTCGATAAAAAAACTTTTATAATTGTGAAAGAAGGACTAGAAAGGAAGATG hal TAATGAATAA-CCATAAA.AAAAATATATAATTTT-AATGAATAACCATAAA........ -60 -50 -40 -30 -20 -10 sub AAA hal ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...