Similar regions between promoters of yshC
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TAGCCGGCATTCCGGTGATTAAACAAATCAACCAGATGCTGGGAGCCGTTCTCGGTTTTC hal ............CGGTGCAAACTCATTTAAACCAGTCGTTAGTCGC......CGGTTTTC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TAGAAGTCTATTTATTTACATTTGTGCTGCTGTATGTCGCATCCGTTCTGCCGGTAGACG hal .AGAAGTTTTTTT............................................... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGTTGCAGCAAATGATGGGGCAATCGTCTCTCGCAAATGTGATCATTAACCATACACCGT hal ....................CAGTCGTTAGTCGCACAGTTTATCATGAACCATACACCAT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]] sub ACTTGTCAGGGCTTTTACAAGAGCTGTGGACACAGTACGGGGCATAA----AAAA--ACT hal TTTTATCTGAGTTTATTCGCAACTTGTGGATTAACAACCCAATGTAATTGGAATAGGACT -120 -110 -100 -90 -80 -70 ]]]]]]]]]]] ]]]]]] sub TCTCTTGTCCG----GAGAAGTTTTTTTCAAGTATGATGGAAACATATGTGAACGTCTGG hal TCTCTTTACGACAAAGAGAAGTTTTTTTGCACTTTAA--GAAACACA............. -60 -50 -40 -30 -20 sub GGGTTATGAT hal .......... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...