Similar regions between promoters of ysnE
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCTTCAGGATTTTACGGACAGCAATTTTCAGGTGCAGGCTTTAGCGGCCATGGCGGCAGC hal ...TCTTGATGTAAAGAACATGAAAGATAAAGT-CAGTCTTTATC.......GCAGCGGC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTAAGTGCTCCAGCGATACATGCCGGCGGATTCAGCGGGGCGCCAGGCGTACACGGAGGC hal TGCCTTGCTCCA................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>> sub TTTAGATATTAAAGAATACCACAAGGGCCGAACATCTATTGCGGTCCTTTTATTGTTTTA hal .........................................CAGTCTTTATCTTGAGTTG -180 -170 -160 -150 -140 -130 sub AAACGACTTCACAAGTACAGTCACATTTTCTGTCTTTATATTTGGAAACAGGATGGAATA hal AAACTA.........................GTCATAAAATCTAACAAACAGCTGGCTTG -120 -110 -100 -90 -80 -70 sub TGATTAAGATGAATTGAACGATATTCTGCACAATCCGTAAGTTTTCGAGGAGGAATAAAA hal TGATGAGGGGGAGTCGTA---TACTATGATCAAGCTTAACATAGCCGAGGAGCGAT.... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...