Similar regions between promoters of ytcP
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>> sub GCCATGGTCCATTGAATCTGCCGTGAATGAACTTGGGTTTTCGCCACA-AATCAATACGG hal .CCTTGGTACAGTGAA...................GGTTTTCACCGAATAATCACTAC.. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>]]]]]]]]]]]]]]]]]]] ]] sub CTGAACTTCTGAACGAGGAGGAGAACGGAGCATAATCATTTTCTAAGATTATGC-TCTTT hal .............................GAATAATCACTACCTTAGAAGAGGGGTCATT -240 -230 -220 -210 -200 -190 sub TTCTTTTGTTATCGGTCTCAATTCGCGGCAGCCCCCGCCCGGCCGGGGACACTGTTCAAA hal TTCTTAT............................................CTGTTTCGA -180 -170 -160 -150 -140 -130 sub TGATTATAGACATGGCAATCACAGATTTGCTACATTTTAGACACGATATCGTCACATGCT hal GGATTGTAGACGCGATAAAATGCCCCTTGGTACAGTGAAGGTAC-AT-TCGTTACGTG-- -120 -110 -100 -90 -80 -70 sub GAGCTCGGTTTCCAAAAATATGATAACGCTTACAAAGGGAGGTGGGAGCTATCGCACATT hal ----TC--TTTGCAAATAAATGATAGCGCTTTC........................... -60 -50 -40 -30 -20 -10 sub CA hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...