Similar regions between promoters of yteV

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCTTGCTCAGTGTGGCGTATTTGCAATATACGCTTACTATGCTTGCGCTGACTGTTGCTC ste .........GTGGGCAGGATTTTCCCTAAATGCGT......................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCTTTTTCTTGCTTGCGTACCTGCCGGGCA-TTGTCCCTTTTTTCAGCGTCAGCCTTATC ste ....................CTACCGGGCGCTTGTCTACTATTTGA.............. -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGCTACTGCCATATGCGCATTGTTTATGCCGTGCTGCTGAAAGTGGAGCAGCACGGCGGC ste AACTTCAGCCAGCTGCGC...GTTTCTGACGT.....................CGGCCGC -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GAGCCACAGAGGAAATCCCATATACGGAAAGCTTTTTATCCGGAAACGAGATAATCATCA ste GACAAAATGGGGAAA..CAAAATGGGGAAAATTTTCTACCGGG................. -120 -110 -100 -90 -80 -70 sub TTTCTCTATCATAACGCTGTTCCAAACGGAATAGATTGATAGAGAAAGGAGAGCGGATAA ste ..............CGCTGTTC...................................... -60 -50 -40 -30 -20 -10 sub A ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...