Similar regions between promoters of yubF
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GACGTATGGTCCAAGCCTTCTACTGATGATCGGTCCATAAGGCTTACCTCTGCCCAATCT ste ....TATAGTCGACGCCAACGACT.................................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TACGTCGGCAAAGACATAAAGGTTGTGTCTAAAAAACAGAAAGGCCAGTCTGTATGGTAC ste ..CGACGCCAACGAC............................................. -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CAATTCCAAATCAATGATAAACTTATCGGCTGGATTGATGATTCAGCTGTTGAAATAAAG ste ....TCCAAAGCTATGCTAAACT..........AGTGATCATTC................ -180 -170 -160 -150 -140 -130 >>>>>>>>>>>> sub GAGGCAACCTAAGCCCTTTTTACTGGTATTTTTAATTCTTTGTTCCATTCCGGGGAATTT ste ......ACCGAATCCCTTTT........................................ -120 -110 -100 -90 -80 -70 sub GAGGTATAATATTCCACGGAAGTTATCACTTTTTA-ACTATGCTTTCGGGAGGGAACAAA ste GCGGTTTTATAGTCGACGCCAACGACTACGATTTGCACGATGC................. -60 -50 -40 -30 -20 -10 sub G ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...