Similar regions between promoters of yugG

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCGAAGGAGAGGAATTACTTTTCTGAAGCTGAATGCAGATGATAAAAAACCGTGTACGCA hal ............AATTCCTTTTTTGAGG................................ -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GACCAGCGTTTGCCTGCCGGGATTTTGATAATGTTCGTAGTATACATTGACTCCATCGAC hal ............................................................ -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CGTAAACCGCCTTATTGGTGAAACCGCCTCCATTCTGTGTCACTCCCTTTTTTTGATGGT hal .....................AACCGATTCCATT.................TTTGATGGT -180 -170 -160 -150 -140 -130 sub TGTATTATGCCCTGAAATTGTCAATTCTAGCGGAAGTTTCTCCTCGTTTTTTCTTAGCAT hal TTTGTT..........................GAAGAGGCTCGTCGTTTAGTATTACCAT -120 -110 -100 -90 -80 -70 sub TCGTCAAAAAACGTGATATAATGTCATGAGATTTCTTGACATTGCAAAGGTGTGAATCAA hal ...................AATTTGATG-GTTTTGTTGAC.................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...