Similar regions between promoters of yunI
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CGTCCCGCTTGCTTCAATGTCAGAACCTATCTCGGCAATGACACCGTTTTGAACTACAAT hal ....CAGCTTTGATGATGGTGAAAAACGATATCG............TTTTTAACAAAAAT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATCAGCTTCTATAACGCCATCTGGCGTAACTGCCTTCGCACCTTTTATCACCATATCGTA hal CTTGCCTTATCTA............................................... -240 -230 -220 -210 -200 -190 <<<<<< sub AGCCATATTGATCCCCCCATGTCAGGATGACGATTTTCCATGTCAGTTTATGTAACACAA hal ........................................TGTGAAGTTTTTTAACAAAA -180 -170 -160 -150 -140 -130 sub CCAGTTCTATTTTCAACAGTTTACTGCTACTATGATCGTATTACATCAGCAAAACCGCTA hal ..................GTTTACTCCGTCTA..................AAATCTGTTA -120 -110 -100 -90 -80 -70 sub GAATTCCTATTGAAAA-TTATTCACCTTAACCAATGTTTTTATAGAAAAGGAGAATGCGC hal AAAATCCTAACAAAAACTTATTCAGATGT-CGTATTTTTTTGTACA.............. -60 -50 -40 -30 -20 -10 sub T hal . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...