Similar regions between promoters of yurF
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATCGAAGCAGGAAAAGCGCTCCAAGCAGCGCTGGATGTGTATGAAAACGCTGGCCGCCAG hal ....................................GCGAATGCAATCGCTG........ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>> ]]]]]]]]] ]]]]]]]]]]] sub GCAGCGGTGTAAAGAAAAGCTTGCGGA-ACTCCGCAAGCTTTTTAACGATATGATTTCGT hal .........TCAAGGAATCCTTGCGTTCATTACGACAAATAAAGAACGATAT........ -240 -230 -220 -210 -200 -190 sub GTTTTCTCCAATCTGATTTTCTTCGTTTGACTCTTTTTACAAATCCTCTTTCTATGTGTT hal .TATTCTCGTCTATGTTCTATCTAGCTTAACGTATCATACACATCAT............. -180 -170 -160 -150 -140 -130 sub TCATTTTCTGACAAATCATGAGTCATTTTTTCTTCCATCGTCTATTCTTTATACAAGTTA hal ..........AAAAATAACGAAACCTATTCTCGTCTATGTTCTAT..TTAAAAGAAATCG -120 -110 -100 -90 -80 -70 sub CCTATAAAATCACGCTGAACTAGTTGTTTCTCACGGCAATTTTCGAGAGGAGGATGCGGC hal CGAATGCAAT--CGCTGAAGTGTTTTTAGCTGA........................... -60 -50 -40 -30 -20 -10 sub A hal . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...