Similar regions between promoters of yurH

sub GTCCTGTTTTTGCGGGCTGCCGGCATTTCTGTTTTCATCCGTTCCGCGAACATCGCCTCT hal ..............................................CGAACATTACCA-T -300 -290 -280 -270 -260 -250 sub CCAGCTTAGCTTGTTCATATGAAAGGCATTTTGACCCTCTCTT-TCGCTCTTGCTGGCTC hal GTACCCTTGCTTGT.....TGAAAGGAGTTTTGACCCTTGCTTGTGGCTCCTGGTGGCTA -240 -230 -220 -210 -200 -190 sub TCTTCCTTACCGTGTTTTCTTTTGACCTTTACATCAAAATAGTTGTGACATGTAGGGTGT hal CAGCACGTATCGTG.............................................. -180 -170 -160 -150 -140 -130 sub ATCTGGTTGCTGGATGGATACTG-TGGCTAAAAAATAAACGTTTTTTTGGTTAATCTGTC hal ......TTGCTTG-TGGCTCCTGGTGGCTACA............................ -120 -110 -100 -90 -80 -70 sub AATGAACTATCATGTTGCTCCTTCTATAATGAAGTCACCATAGCGGCCAGAGGGGGGAGT hal ......CTTGCTTGTGGCTCCT............TCACTAAAGCCGTCA........... -60 -50 -40 -30 -20 -10 sub AC hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...