Similar regions between promoters of yurR

sub CTTCTCCGTCTTGTGACTGCGCCTGTGCCTGATCCTGATCTGTGTTCACGCTGACCACGA ste ...........................................GTTCAGGCAGGCGGCTG -300 -290 -280 -270 -260 -250 sub CTTTTGC--ATTACCGCTGTTTTGGACTTTTGCCACTGCCGCATCGCGTCTGTTTTCTTC ste CTGTTCCCCATTGACGCTG................................GTTGTCTTC -240 -230 -220 -210 -200 -190 sub ATTTTCATGACGATTTTCGCTCATGGTATCATCCTTTCTCTATTGATAGTGACAGGATAT ste CATTTCA...................TATCATCCGGTC...................... -180 -170 -160 -150 -140 -130 sub TCGATAGGAGAGTAAAGAGATTGGACGAACTTCGCGGTTTTTCCACATTAGGGCAAAAGG ste .................................GCTGCTGTTCCCCATT........... -120 -110 -100 -90 -80 -70 sub TCGAAGGAAAGCATTTGATTTGGTAAAATGAATAGACATTATAATAGAAAAGGTGTTTGC ste ..............................AATAGAGAAAAACGCAGAAAAGGTGT.... -60 -50 -40 -30 -20 -10 sub AT ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...