Similar regions between promoters of yuxN

sub AATTTGTTTTGAGCGGCTGTTTGCATTGATGAACCCATTTTTTCTC-TGACAAGGTCTGC ste ................CCGCTTGCGCTGACGAA..CATTTTTTTTCATGGCAAGATCGAC -300 -290 -280 -270 -260 -250 sub TTCGGATATTTGACTTTCTCCACTTTGATTCCTCTGTTTCGCAAGCGGCTGATCATTTCG ste T...................CACGTTGATTTC....TTTCGAAAG-GGCTGGCCAT.... -240 -230 -220 -210 -200 -190 sub TCCAATTCTCTCATTCTAGATTCACCCTTTCGCTTGAGCTTTGACCATTCGGTCATCTCA ste .........................CATTCCGCTTGCGCT............TCATGGCA -180 -170 -160 -150 -140 -130 sub ATTTATAATATAAATAATACATGATAAAAAAACAAGTTACAATAAGGTTAATTTTATAAC ste AGATCGACTATAATGGA--CATGAAAGAA............................... -120 -110 -100 -90 -80 -70 sub AGACGGTGTGACTATA-TGGTCATATCCTAGCAGGCCTCCGGGCTCCGAAAGGGTGGAAC ste .........GACTATAATGGACAT....................TTCGAAAGGG...... -60 -50 -40 -30 -20 -10 sub CA ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...