Similar regions between promoters of yvaL

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GGAAAAATCACCCTGAAATGCTTGGATAGAAGGCGCTGATAATAAAAAACCTTTCGTCCC hal ...................................CTCATGTTAAGAAGCTGTTTGTC.. -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATGCCCGGCGGGTGGATAAAAATGATAGGGATTCCCTGTCCATATTCTTCATAAAAAAGA hal .......GCGGGTGGTT..................................TTAAGAAGC -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TGTTTCCTGCTGTCTATGCTGATAAGCGGCATCGCTTTTCTCCTTTGACCTTTTCATATG hal TGTTT...............................TTTTTCGTTTGAC........... -180 -170 -160 -150 -140 -130 sub AATAGGGTAACCAAGATAAAACGTCTTATCCGGCCTTTTGGCGTCTGATACAGCGTGACA hal ..............................CGCCCTTTTGGC.................A -120 -110 -100 -90 -80 -70 sub TGCCAACCCTTTTCATGTAAAATAGAAGTAATGTAGCCAGTGAGTCTGGAGGTGTATGGG hal TTCTAACCCTTT...........................GTGCTTGTGGAGGTGTGT... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...