Similar regions between promoters of yvjA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGTTCTTATGTATTCCATCCGTATTCCATGGTAAAAGACCATCGGACCAATACAGAAATG hal ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GGGAACGTTCAAGCTGTAATGGATGGTGACATTGATACGTTTATTGATGCCTACCTGCGT hal ...................TGGATTGTTCTTTTTATATGTGGATAAAT............ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]]]] sub TCTAAGCTTTCATAAGCTGAAAAACACACCTGATGCATACGGGTGTGTT-TTTTTATTTC hal ..................GAAAAACACGC............GGATTGTTCTTTTTATATG -180 -170 -160 -150 -140 -130 sub T---TATATCCTTGATTTCACTGCTGCTTTAGCATATTACCACTGTATTTGGGTGTTATT hal TGGATAAATAGTGTACTTTACTGCGGCATTACGTTACTTAGTTTGCATTT.......... -120 -110 -100 -90 -80 -70 sub TACATCTAATCAGGGAAGGATTAAAATGCTATCGGAGAGCATTGGAAGAAACGGAGGATA hal .................GGATAAAAATGAT............TGGATAAAAATGATGATA -60 -50 -40 -30 -20 -10 sub TATG hal ATTG -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...